S-Index

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S

savePattern() - Method in class application.controller.MainController
savePattern(File) - Method in class application.commands.SimulationCommand
saveRLE() - Method in class application.controller.MainController
saveToFile() - Method in class application.controller.dialogs.search.SearchResultsDialog
search(int) - Method in class application.model.search.catsrc.CatalystSearch
search(int) - Method in class application.model.search.cfind.ShipSearch
search(int) - Method in class application.model.search.csearch.BruteForceSearch
search(int) - Method in class application.model.search.ocgar2.AgarSearch
search(int) - Method in class application.model.search.rulesrc.RuleSearch: Searches numRules for a spaceship / oscillator that matches the target pattern
search(int) - Method in class application.model.search.SearchProgram: Search for something num times
searchParameters - Variable in class application.controller.dialogs.search.SearchParametersDialog
searchParameters - Variable in class application.model.search.SearchProgram
SearchParameters - Class in application.model.search: The search parameters of a given search program
SearchParameters() - Constructor for class application.model.search.SearchParameters
SearchParametersDialog - Class in application.controller.dialogs.search: A dialog to obtain search parameters from a search dialog
SearchParametersDialog() - Constructor for class application.controller.dialogs.search.SearchParametersDialog: Constructs the dialog
searchProgram - Variable in class application.controller.dialogs.search.SearchResultsDialog
SearchProgram - Class in application.model.search: All search programs built into CAViewer should inherit from this
SearchProgram(SearchParameters) - Constructor for class application.model.search.SearchProgram: Constructs a search program with the provided parameters
searchResults - Variable in class application.model.search.SearchProgram
SearchResultsDialog - Class in application.controller.dialogs.search
SearchResultsDialog(MainController, SearchProgram) - Constructor for class application.controller.dialogs.search.SearchResultsDialog
searchThreaded(int, int) - Method in class application.model.search.cfind.ShipSearch
searchThreaded(int, int) - Method in class application.model.search.csearch.BruteForceSearch
searchThreaded(int, int) - Method in class application.model.search.SearchProgram: Performs the search but with multi-threading
select(Coordinate) - Method in class application.controller.SelectionRectangle: Selects the specified area
select(Coordinate, Coordinate) - Method in class application.controller.SelectionRectangle: Selects the specified area
selected - Static variable in class application.controller.dialogs.search.PatternsDialog
SELECTING - application.controller.Mode
selectionMode() - Method in class application.controller.MainController
SelectionRectangle - Class in application.controller: The selection rectangle used by CAViewer to select multiple cells
SelectionRectangle(int) - Constructor for class application.controller.SelectionRectangle: Constructs a selection rectangle
setBackground(int) - Method in class application.model.simulation.Grid: Set the background of the grid
setBackground(int[]) - Method in class application.model.rules.Rule: Sets the background of the rule
setBirth(INTTransitions) - Method in class application.model.rules.isotropic.rules.DeficientINT: Sets the birth conditions of the deficient INT rule
setBirth(INTTransitions) - Method in class application.model.rules.isotropic.rules.INT: Sets the birth conditions of the INT rule
setBirth(INTTransitions) - Method in class application.model.rules.isotropic.rules.INTGenerations: Sets the birth conditions of the INT generations rule
setBirth(HashSet<Integer>) - Method in class application.model.rules.hrot.DeficientHROT: Sets the birth conditions of the rule
setBirth(HashSet<Integer>) - Method in class application.model.rules.hrot.HROT: Sets the birth conditions of the rule
setBirth(HashSet<Integer>) - Method in class application.model.rules.hrot.HROTBSFKL: Sets the birth conditions of the HROT BSFKL rule
setBirth(HashSet<Integer>) - Method in class application.model.rules.hrot.HROTExtendedGenerations: Sets the birth conditions of the rule
setBirth(HashSet<Integer>) - Method in class application.model.rules.hrot.HROTGenerations: Sets the birth conditions of the rule
setBirth(HashSet<Integer>) - Method in class application.model.rules.hrot.HROTRegeneratingGenerations: Sets the birth conditions of the rule
setBirth(TreeSet<Integer>) - Method in class application.model.rules.hrot.IntegerHROT: Sets the birth conditions of the rule
setBoundedGrid(BoundedGrid) - Method in class application.model.rules.Rule: Sets the bounded grid of the rule
setCapacity(int) - Method in class application.model.LRUCache: Sets the capacity of the LRU cache
setCell(int, int, int) - Method in class application.controller.MainController
setCell(int, int, int) - Method in class application.model.simulation.Block: Sets the value of a cell in the block
setCell(int, int, int) - Method in class application.model.simulation.Grid: Sets the cell at position (x, y) to the specified state
setCell(int, int, int) - Method in class application.model.simulation.Simulator: Sets the cell at position (x, y) to the specified state
setCell(int, int, int, boolean) - Method in class application.controller.MainController
setCell(int, int, int, boolean, boolean) - Method in class application.controller.MainController
setCell(Coordinate, int) - Method in class application.model.simulation.Grid: Sets the cell at position coordinate to the specified state
setCell(Coordinate, int) - Method in class application.model.simulation.Simulator: Sets the cell at position coordinate to the specified state
setCheckValid(Function<V, Boolean>) - Method in class application.model.LRUCache: Checks if a given value is valid in the LRU cache
setController(MainController) - Static method in class application.controller.Action
setCoordinate(Coordinate) - Method in class application.model.Cell
setDeleteFunc(BiConsumer<K, V>) - Method in class application.model.LRUCache: Sets the function that should run when a value is deleted
setForcing(HashSet<Integer>) - Method in class application.model.rules.hrot.HROTBSFKL: Sets the forcing conditions of the HROT BSFKL rule
setGeneration() - Method in class application.controller.MainController
setGeneration(int) - Method in class application.model.simulation.Simulator: Set the generation of the simulator
setInitialCoordinate(Coordinate) - Method in class application.model.simulation.bounds.BoundedGrid: Sets the initial coordinate of the bounded grid
setInteracted(boolean) - Method in class application.model.search.catsrc.PlacedCatalyst
setKilling(HashSet<Integer>) - Method in class application.model.rules.hrot.HROTBSFKL: Sets the killing conditions of the HROT BSFKL rule
setLiving(HashSet<Integer>) - Method in class application.model.rules.hrot.HROTBSFKL: Sets the living conditions of the HROT BSFKL rule
setMaxRule(RuleFamily) - Method in class application.model.patterns.Pattern
setMinRule(RuleFamily) - Method in class application.model.patterns.Pattern
setNeighbourhood(Coordinate[]) - Method in class application.model.rules.hrot.BaseHROT: Sets the neighbourhood of the HROT rule
setNeighbourhood(Coordinate[]) - Method in class application.model.rules.ruleloader.ruletable.Ruletable: Sets the neighbourhood of the ruletable
setNumStates(int) - Method in class application.model.rules.ruleloader.ruletable.Ruletable: Sets the number of states of the ruletable
setOnWeightsChanged(Runnable) - Method in class application.controller.NeighbourhoodSelector: The method to call when the weights change
setPermute() - Method in class application.model.rules.ruleloader.ruletable.Ruletable: Enables permute symmetry
setPhases(Grid[]) - Method in class application.model.patterns.LinearGrowth
setPhases(Grid[]) - Method in class application.model.patterns.Oscillator
setPhases(Grid[]) - Method in class application.model.patterns.Pattern
setPhases(Grid[]) - Method in class application.model.patterns.Spaceship
setReadingOrder(ReadingOrder) - Method in class application.model.rules.Rule: Sets the naive reading order of the rule
setRegenBirth(HashSet<Integer>) - Method in class application.model.rules.hrot.HROTRegeneratingGenerations: Sets the regenerating birth conditions of the rule
setRegenerated(boolean) - Method in class application.model.search.catsrc.PlacedCatalyst
setRegenSurvival(HashSet<Integer>) - Method in class application.model.rules.hrot.HROTRegeneratingGenerations: Sets the survival conditions of the rule
setRule(Rule) - Method in class application.model.simulation.Simulator: Sets the rule of the simulator.
setRule(RuleFamily) - Method in class application.controller.dialogs.rule.RuleDialog
setRuleDirectory() - Method in class application.controller.MainController
setRuleFamily(RuleFamily) - Method in class application.controller.dialogs.rule.RuleWidget
setRulestring(String) - Method in class application.model.rules.RuleFamily: Sets the rulestring of the rule family to the inputted value
setSearchProgram(SearchProgram) - Method in class application.controller.dialogs.search.SearchResultsDialog
setSimSpeed() - Method in class application.controller.MainController
setSpecifier(String) - Method in class application.model.rules.misc.naive.Orthogonal
setSpecifier(String) - Method in class application.model.rules.misc.naive.ReadingOrder: Sets the specifier for the naive reading order
setSpecifier(String) - Method in class application.model.simulation.bounds.BoundedGrid: Sets the bounded grid specifier
setState(int) - Method in class application.model.Cell
setState(BlockState) - Method in class application.model.simulation.Block: Sets the state of the block
setStateWeights(int[]) - Method in class application.model.rules.hrot.HROTGenerations: Sets the states weights of the rule
setStateWeights(int[]) - Method in class application.model.rules.hrot.HROTRegeneratingGenerations: Sets the states weights of the rule
setStepSize() - Method in class application.controller.MainController
setString(String) - Method in class application.model.database.GliderDBEntry: Sets the entry string
setSurvival(INTTransitions) - Method in class application.model.rules.isotropic.rules.DeficientINT: Sets the survival conditions of the deficient INT rule
setSurvival(INTTransitions) - Method in class application.model.rules.isotropic.rules.INT: Sets the survival conditions of the INT rule
setSurvival(INTTransitions) - Method in class application.model.rules.isotropic.rules.INTGenerations: Sets the survival conditions of the INT generations rule
setSurvival(HashSet<Integer>) - Method in class application.model.rules.hrot.DeficientHROT: Sets the survival conditions of the rule
setSurvival(HashSet<Integer>) - Method in class application.model.rules.hrot.HROT: Sets the survival conditions of the rule
setSurvival(HashSet<Integer>) - Method in class application.model.rules.hrot.HROTBSFKL: Sets the survival conditions of the HROT BSFKL rule
setSurvival(HashSet<Integer>) - Method in class application.model.rules.hrot.HROTExtendedGenerations: Sets the survival conditions of the rule
setSurvival(HashSet<Integer>) - Method in class application.model.rules.hrot.HROTGenerations: Sets the survival conditions of the rule
setSurvival(HashSet<Integer>) - Method in class application.model.rules.hrot.HROTRegeneratingGenerations: Sets the survival conditions of the rule
setSurvival(TreeSet<Integer>) - Method in class application.model.rules.hrot.IntegerHROT: Sets the survival conditions of the rule
setSymmetry(Symmetry) - Method in class application.model.rules.ruleloader.ruletable.Ruletable: Sets the symmetry of the ruletable
SETTINGS_FILE - Static variable in class application.controller.MainController
setTransitionString(String) - Method in class application.model.rules.isotropic.transitions.INTTransitions: Sets the transition string of the INT transitions
setWeights(int[]) - Method in class application.model.rules.hrot.BaseHROT: Sets the weights of the HROT rule
setWeights(int[]) - Method in class application.model.rules.ruleloader.ruletable.Ruletable: Sets the weights of the ruletable
setWeights(int[][]) - Method in class application.controller.NeighbourhoodSelector: Sets the weights of the neighbourhood selector
shallowCopy() - Method in class application.model.simulation.Grid: Shallow copies the grid
SharedWidgets - Class in application.controller.dialogs.rule
SharedWidgets() - Constructor for class application.controller.dialogs.rule.SharedWidgets
ShipSearch - Class in application.model.search.cfind: Implements CAViewer's gfind-like ship search program - cfind for multi-state and higher range rules.
ShipSearch(ShipSearchParameters) - Constructor for class application.model.search.cfind.ShipSearch: Constructs the ship search program with the provided parameters
ShipSearchParameters - Class in application.model.search.cfind: The parameters for CAViewer's ship search program - cfind.
ShipSearchParameters(Rule, int, int, int) - Constructor for class application.model.search.cfind.ShipSearchParameters
showRuleFamilyDescription() - Method in class application.controller.dialogs.rule.RuleDialog
SimulationCommand - Class in application.commands
SimulationCommand() - Constructor for class application.commands.SimulationCommand
SimulationMode - Enum in application.controller
Simulator - Class in application.model.simulation: Simulations are run using Simulator.
Simulator(Rule) - Constructor for class application.model.simulation.Simulator: Initialises the simulator
SingleLetterTransitions - Class in application.model.rules.isotropic.transitions: Handles INT transitions that consist of single letters (e.g.
SingleLetterTransitions(String) - Constructor for class application.model.rules.isotropic.transitions.SingleLetterTransitions: Constructs INT transitions that consist of single letters
size() - Method in class application.model.LRUCache: Size of the LRU cache
size() - Method in class application.model.simulation.Grid: Gets the size of the grid
slowEquals(Grid, int, int) - Method in class application.model.simulation.Grid: Checks if 2 grids are identical given a translation.
snapToGrid(int) - Method in class application.controller.MainController
snapToGrid(Coordinate) - Method in class application.controller.MainController
sortedTransitionTable - Variable in class application.model.rules.isotropic.transitions.INTTransitions: A transition table that is sorted in lexicographical order (useful for deficient rules).
SOSSPReader - Class in application.model.database: Reads the Smallest Oscillator Supporting Specfic Periods (SOSSP) database.
SOSSPReader(File) - Constructor for class application.model.database.SOSSPReader: Constructs the reader
Spaceship - Class in application.model.patterns: Represents a spaceship
Spaceship(Rule, Grid, int, int, int) - Constructor for class application.model.patterns.Spaceship: Constructs a spaceship
specifier - Variable in class application.model.rules.misc.naive.ReadingOrder: The specifier for the naive reading order
specifier - Variable in class application.model.simulation.bounds.BoundedGrid
spinnerThreads - Variable in class application.controller.dialogs.search.SearchParametersDialog
SQC - Class in application.model.rules.ruleloader: Implements Square Cell Ruletables (@SQC) which are essentially transition tables that work based on neighbourhood sum.
SQC(String) - Constructor for class application.model.rules.ruleloader.SQC
Square - application.model.rules.Tiling
SSSCommand - Class in application.commands
SSSCommand() - Constructor for class application.commands.SSSCommand
SSSOscillator - Class in application.model.database: Represents an oscillator from the Smallest Oscillators Supporting Specific Periods project.
SSSOscillator(Oscillator) - Constructor for class application.model.database.SSSOscillator
SSSOscillator(String) - Constructor for class application.model.database.SSSOscillator
SSSSpaceship - Class in application.model.database: A spaceship from the 5S database
SSSSpaceship(Spaceship) - Constructor for class application.model.database.SSSSpaceship
SSSSpaceship(String) - Constructor for class application.model.database.SSSSpaceship
SSSSSReader - Class in application.model.database: Reads the Smallest Spaceship Supporting Specific Speeds (5S) database.
SSSSSReader(File) - Constructor for class application.model.database.SSSSSReader: Constructs the reader
STABLE - application.model.simulation.BlockState
startAboutDialog() - Method in class application.controller.MainController
startAgarSearchDialog() - Method in class application.controller.MainController
startBruteForceSearchDialog() - Method in class application.controller.MainController
startCatalystSearchDialog() - Method in class application.controller.MainController
startRuleDialog() - Method in class application.controller.MainController
startRuleSearchDialog() - Method in class application.controller.MainController
State - Class in application.model.search.cfind
State() - Constructor for class application.model.search.cfind.State
stateLookup - Variable in class application.model.rules.isotropic.rules.DeficientINT: Maps the transition string to the associated deficient state
StateWeightsSelector - Class in application.controller: A widget that selects state weights for a rule.
StateWeightsSelector(int) - Constructor for class application.controller.StateWeightsSelector: Constructs a state weight selector with the specified number of states
step() - Method in class application.model.simulation.Simulator: Step the simulation forward 1 generation
step(Grid, ArrayList<Set<Coordinate>>, int, Function<Coordinate, Boolean>) - Method in class application.model.rules.misc.AlternatingRule
step(Grid, ArrayList<Set<Coordinate>>, int, Function<Coordinate, Boolean>) - Method in class application.model.rules.misc.Euclidean
step(Grid, ArrayList<Set<Coordinate>>, int, Function<Coordinate, Boolean>) - Method in class application.model.rules.misc.Margolus
step(Grid, ArrayList<Set<Coordinate>>, int, Function<Coordinate, Boolean>) - Method in class application.model.rules.Rule: Steps the grid provided forward one generation
step(Function<Coordinate, Boolean>) - Method in class application.model.simulation.Simulator: Step a portion of the simulation forward 1 generation
stop - Variable in class application.model.search.SearchProgram
subtract(Coordinate) - Method in class application.model.Coordinate: Adds 2 coordinates.
sum(Collection<Double>) - Static method in class application.model.rules.misc.Summarizer: Sums up the rest of the partial numbers which cannot be summed up without loss of precision.
Summarizer - Class in application.model.rules.misc: Adds up numbers in an array with perfect precision, and in O(n).
Summarizer() - Constructor for class application.model.rules.misc.Summarizer
survival - Variable in class application.model.rules.hrot.HROT: The survival conditions of the HROT rule
survival - Variable in class application.model.rules.isotropic.rules.DeficientINT: The survival transitions of the deficient INT rule
survival - Variable in class application.model.rules.isotropic.rules.INT: The survival transitions of the INT rule
survival - Variable in class application.model.rules.isotropic.rules.INTGenerations: The survival transitions of the INT generations rule
symmetries - Static variable in class application.model.SymmetryGenerator: The list of symmetries
Symmetry - Class in application.model.rules.ruleloader.ruletable: Represents symmetries as disjoint cycles like lifelib.
Symmetry(int[][][]) - Constructor for class application.model.rules.ruleloader.ruletable.Symmetry: Constructs a new symmetry with the provided disjoint cycles
Symmetry(String) - Constructor for class application.model.rules.ruleloader.ruletable.Symmetry: Constructs a new symmetry with an inputted string.
SymmetryGenerator - Class in application.model: Contains useful methods for generating random soups and implementing symmetries
SymmetryGenerator() - Constructor for class application.model.SymmetryGenerator
SynthesisCommand - Class in application.commands
SynthesisCommand() - Constructor for class application.commands.SynthesisCommand

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